Proteomics
- SBase – prediction of protein domain similarities from protein sequence
- FPredict – prediction of protein function from protein sequence using COG
- Pride – prediction of domain similarities from protein 3D structure
- CX – identifying protruding atoms in protein 3D structures
- DPX – identifying the internal core in protein 3D structures
- PCW – protein core/surface visualization workbench
- Protein classification benchmark collection
- Miscellaneous utilities
Genomics
- Bend.it – predicting bent DNA regions from DNA sequence
- Plot.it – plotting physicochemical parameters of DNA sequences
- Model.it – prediction of DNA 3D structures from sequence
- A survey of Quorum sensing genes in Gram negative Bacteria
- A survey of Quorum sensing genes in the Burkholderia genus
- Taxoner Fast alignment and microorganism classification
Integrative database
- JBioWH – Integrative database Webservices